Interkingdom assemblages in human saliva display group-level surface mobility and disease-promoting emergent functions

Fungi and bacteria often engage in complex interactions, such as the formation of multicellular biofilms within the human body. Knowledge about how interkingdom biofilms initiate and coalesce into higher-level communities and which functions the different species carry out during biofilm formation remain limited. We found native-state assemblages of Candida albicans (fungi) and Streptococcus mutans (bacteria) with highly structured arrangement in saliva from diseased patients with childhood tooth decay. Further analyses revealed that bacterial clusters are attached within a network of fungal yeasts, hyphae, and exopolysaccharides, which bind to surfaces as a preassembled cell group. The interkingdom assemblages exhibit emergent functions, including enhanced surface colonization and growth rate, stronger tolerance to antimicrobials, and improved shear resistance, compared to either species alone. Notably, we discovered that the interkingdom assemblages display a unique form of migratory spatial mobility that enables fast spreading of biofilms across surfaces and causes enhanced, more extensive tooth decay. Using mutants, selective inactivation of species, and selective matrix removal, we demonstrate that the enhanced stress resistance and surface mobility arise from the exopolymeric matrix and require the presence of both species in the assemblage. The mobility is directed by fungal filamentation as hyphae extend and contact the surface, lifting the assemblage with a “forward-leaping motion.” Bacterial cell clusters can “hitchhike” on this mobile unit while continuously growing, to spread across the surface three-dimensionally and merge with other assemblages, promoting community expansion. Together, our results reveal an interkingdom assemblage in human saliva that behaves like a supraorganism, with disease-causing emergent functionalities that cannot be achieved without coassembly.

The microbial life on Earth often resides on surfaces, where cells form multicellular structures known as biofilms (1). Extensive efforts have been devoted to understanding the biofilm formation process and the mechanisms underlying the biofilm lifestyle (1–3). While most studies have focused on bacteria, eukaryotic microbes also frequently form biofilms. Furthermore, previous studies have revealed that biofilms composed of bacteria and fungi are highly abundant in nature, establishing complex interkingdom interactions (4–7). Such bacterial–fungal biofilms can display enhanced virulence and survival, which is achieved through tight cell–cell cohesion, metabolite exchange, and extracellular polymeric matrices within established communities (4–6). How interkingdom biofilms initiate and develop on the surface, and which functions the different species carry out during this process, remains unclear.In the human oral cavity, biofilms formed by bacteria and fungi have a major impact on health (7, 8). For example, patients affected by severe childhood caries (tooth decay), a widespread and costly infectious disease affecting toddlers worldwide (9), display high carriage of the bacterium Streptococcus mutans and the fungus Candida albicans, both in saliva and in biofilms formed on teeth (dental plaque) (10). Previous studies have shown that these distinct microbes form interkingdom biofilms with enhanced virulence under sugar-rich conditions (11, 12). However, interactions of these two species in saliva have not been characterized, and the extent to which the interactions between S. mutans and C. albicans influence the dynamics of biofilm formation and its functional properties is unknown.In this study, we investigated the interactions between S. mutans and C. albicans during colonization and biofilm formation in human saliva, and made several unexpected discoveries with implications for disease. We observed that in saliva of toddlers affected by severe tooth decay, S. mutans and C. albicans formed highly structured interkingdom assemblages. Using real-time multiscale imaging and computational analysis, we studied the organization of such interkingdom assemblages and assessed their role during biofilm formation spatiotemporally. These experiments showed that bacterial clusters attached to yeast and hyphal complexes to form assemblages that display emergent properties, including enhanced surface colonization, a higher growth rate, and a stronger tolerance to shear stress and antimicrobials, which are not observed in either bacteria or fungi alone. Surprisingly, when individually tracked, these interkingdom assemblages display a unique mode of migratory group-level mobility, enabled by fungal filamentation across surfaces, which is used by the attached bacterial clusters for “hitchhiking.” Through this mobility, the interkingdom assemblages rapidly proliferate across the surface and expand three-dimensionally, leading to biofilm superstructures and extensive enamel decay on ex vivo tooth surfaces that cannot be achieved by each species alone. Hence, our data reveal an interkingdom assemblage found in human saliva that efficiently colonizes, displays emergent properties, and enhances surface spreading through a group-level mobility mechanism that propels clusters of otherwise nonmotile bacteria and fungi across the surface, to ultimately promote community spatial expansion and disease-causing activity.