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瞬时受体电位M8型离子通道选择性滤器的三维结构计算建模
引用本文:徐丽臻,杨帆.瞬时受体电位M8型离子通道选择性滤器的三维结构计算建模[J].浙江大学学报(医学版),2019,48(1):19-24.
作者姓名:徐丽臻  杨帆
作者单位:浙江大学医学院生物物理系, 浙江 杭州 310058
基金项目:国家自然科学基金(31741067,31800990)
摘    要: 目的 构建瞬时受体电位M8型(TRPM8)离子通道选择性滤器结构域的三维结构模型。 方法 在Rosetta计算结构生物学工具包中,使用基于运动回路闭合算法的从头计算,对TRPM8离子通道选择性滤器结构域进行多轮计算建模。 结果 经过9轮计算得到了能量最低且结构收敛的TRPM8通道选择性滤器结构域的三维结构模型,发现D918位点的侧链并不指向离子流过的孔区中心,而Q914、D920和T923位点的侧链指向孔区中心;糖基化位点N934位于孔区外侧,其侧链指向胞外水环境。 结论 构建了TRPM8通道选择性滤器结构域的三维结构模型,为理解该通道的离子选择性及相关机制提供了较为可靠的结构信息。

关 键 词:瞬时受体电位通道  TRPM阳离子通道  氨基酸序列  计算机模拟  
收稿时间:2018-07-25

Structural modeling of selectivity filter in transient receptor pontential melastatin 8 ion channel
XU Lizhen,YANG Fan.Structural modeling of selectivity filter in transient receptor pontential melastatin 8 ion channel[J].Journal of Zhejiang University(Medical Sciences),2019,48(1):19-24.
Authors:XU Lizhen  YANG Fan
Institution:Department of Biophysics, Zhejiang University School of Medicine, Hangzhou 310058, China
Abstract: Objective To construct a three-dimensional structural model for the selectivity filter in the transient receptor pontential melastatin 8 (TRPM8) ion channel. Methods In the Rosetta computational structural biology suite, multiple rounds of de novo modeling with the kinematic loop closure algorithm were performed. Results After nine rounds of computational modeling, we obtained the models of the selectivity filter within the TRPM8 channel with the lowest energy and high convergence. The model showed that the sidechain of D918 points were away from the central ion permeation pathway, while the sidechains of Q914, D920 and T923 pointed towards it.The glycosylation site N934 was located outside the pore region and its side chain directed to the extracellular water environment. Conclusion A three-dimensional structural model for the selectivity filter in the TRPM8 ion channel was constructed, which provides reliable structural information for exploring the mechanism of ion selectivity.
Keywords:Transient receptor potential channels  TRPM cation channels  Amino acid sequence  Computer simulation  
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