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In silico repurposing the Rac1 inhibitor NSC23766 for treating PTTG1-high expressing clear cell renal carcinoma
Authors:Yao-Yu Hsieh  Tsang-Pai Liu  Pei-Ming Yang
Affiliation:1. Ph.D. Program for Cancer Molecular Biology and Drug Discovery, College of Medical Science and Technology, Taipei Medical University and Academia Sinica, Taipei 11031, Taiwan;2. Division of Hematology and Oncology, Taipei Medical University Shuang Ho Hospital, New Taipei City 23561, Taiwan;3. Division of Hematology and Oncology, Department of Internal Medicine, School of Medicine, College of Medicine, Taipei Medical University, Taipei 11031, Taiwan;4. Department of Surgery, Mackay Memorial Hospital, Taipei 10449, Taiwan;5. Liver Medical Center, Mackay Memorial Hospital, Taipei 10449, Taiwan;6. Mackay Junior College of Medicine, Nursing and Management, New Taipei City 25245, Taiwan;7. Department of Medicine, Mackay Medical College, New Taipei City 25245, Taiwan;8. Graduate Institute of Cancer Biology and Drug Discovery, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan;9. TMU Research Center of Cancer Translational Medicine, Taipei Medical University, Taipei 11031, Taiwan
Abstract:The pituitary tumor-transforming gene 1 (PTTG1), also known as Securin, is considered an oncogene. This study aimed to investigate the role of PTTG1 in clear cell renal cell carcinoma (ccRCC) using in silico bioinformatics approaches. A pan-cancer analysis using The Cancer Genome Atlas (TCGA) data indicated that among all cancer types copy number amplification of PTTG1 gene was most frequently found in ccRCC. However, amplification of PTTG1 gene copy number did not correlate with the increase of mRNA level in ccRCC, and did not predict the patients' overall survival. Instead, ccRCC was correlated with overexpression of PTTG1 mRNA, and its expression level was stage-dependent increased in cancer patients. An outlier analysis using the Oncomine database suggested that PTTG1 mRNA expression served as a good biomarker for ccRCC. Pathway analysis for upregulated genes enriched in PTTG1-high expressing ccRCC patients found that PTTG1 overexpression was associated with mitotic defects. Mining drug sensitivity data using the Cancer Therapeutics Response Portal (CTRP) discovered that PTTG1-high expressing ccRCC cell lines were susceptible to a Rac1 (Ras-related C3 botulinum toxin substrate 1) inhibitor NSC23766. Therefore, this study provides an in silico insight into the role of PTTG1 in ccRCC, and repurposes the Rac1 inhibitor NSC23766 for treating PTTG1-high expressing ccRCC.
Keywords:Corresponding author at: Graduate Institute of Cancer Biology and Drug Discovery, College of Medical Science and Technology, Taipei Medical University, 250 Wuxing Street, Taipei 11031, Taiwan.  APC  anaphase promoting complex  AR  androgen receptor  AURK  aurora kinase  BAP1  BRCA1-associated protein-1  ccRCC  clear cell renal cell carcinoma  CDC20  cell division cycle 20  CDK1  cyclin-dependent kinase 1  chRCC  chromophobe renal cell carcinoma  CMap  Connectivity Map  COL23A1  collagen type XXIII alpha 1 chain  CTRP  Cancer Therapeutics Response Portal  EGFR  epidermal growth factor receptor  FoxM1  forkhead box M1  GEPIA  Gene Expression Profiling Interactive Analysis  HIF  hypoxia-inducible factor  KIRC  kidney renal clear cell carcinoma  LOX  lysyl oxidase  MoA  mechanisms of action  mTOR  mammalian target of rapamycin  NF-Y  nuclear factor-Y  PD-1  programmed cell death protein 1  PDGFR  platelet-derived growth factor receptor  PLK1  polo-like kinase 1  pRCC  papillary renal cell carcinoma  PTTG1  pituitary tumor-transforming gene 1  Rac1  Ras-related C3 botulinum toxin substrate 1  RCC  Renal cell carcinoma  SETD2  SET domain containing 2  STAT3  signal transducer and activator of transcription 3  STRING  Search Tool for the Retrieval of Interacting Genes/Proteins  SQSTM1  sequestosome 1  SREBP1c  sterol regulatory element-binding protein 1c  TCF  β-catenin/T cell factor  TCGA  The Cancer Genome Atlas  TGFBI  transforming growth factor, beta-induced gene  TKI  tyrosine kinase inhibitor  VCAN  versican  VEGF  vascular endothelial growth factor  VEGFR  VEGF receptor  VHL  Von Hippel-Lindau  Bioinformatics  Cell cycle  Clear cell renal carcinoma  Drug repurposing  PTTG1  Rac1 inhibitor
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