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Detailed Molecular Interactions between Respiratory Syncytial Virus Fusion Protein and the TLR4/MD-2 Complex In Silico
Authors:Mao Akagawa  Tatsuya Shirai  Mitsuru Sada  Norika Nagasawa  Mayumi Kondo  Makoto Takeda  Koo Nagasawa  Ryusuke Kimura  Kaori Okayama  Yuriko Hayashi  Toshiyuki Sugai  Takeshi Tsugawa  Haruyuki Ishii  Hisashi Kawashima  Kazuhiko Katayama  Akihide Ryo  Hirokazu Kimura
Abstract:Molecular interactions between respiratory syncytial virus (RSV) fusion protein (F protein) and the cellular receptor Toll-like receptor 4 (TLR4) and myeloid differentiation factor-2 (MD-2) protein complex are unknown. Thus, to reveal the detailed molecular interactions between them, in silico analyses were performed using various bioinformatics techniques. The present simulation data showed that the neutralizing antibody (NT-Ab) binding sites in both prefusion and postfusion proteins at sites II and IV were involved in the interactions between them and the TLR4 molecule. Moreover, the binding affinity between postfusion proteins and the TLR4/MD-2 complex was higher than that between prefusion proteins and the TLR4/MD-2 complex. This increased binding affinity due to conformational changes in the F protein may be able to form syncytium in RSV-infected cells. These results may contribute to better understand the infectivity and pathogenicity (syncytium formation) of RSV.
Keywords:respiratory syncytial virus   Toll-like receptor 4   myeloid differentiation factor-2   in silico   docking simulation
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