| Abstract: | ![]()
DNA double strand breaks (DSBs) are mainly repaired via homologous recombination (HR) or nonhomologous end joining (NHEJ). These breaks pose severe threats to genome integrity but can also be necessary intermediates of normal cellular processes such as immunoglobulin class switch recombination (CSR). During CSR, DSBs are produced in the G1 phase of the cell cycle and are repaired by the classical NHEJ machinery. By studying B lymphocytes derived from patients with Cornelia de Lange Syndrome, we observed a strong correlation between heterozygous loss-of-function mutations in the gene encoding the cohesin loading protein NIPBL and a shift toward the use of an alternative, microhomology-based end joining during CSR. Furthermore, the early recruitment of 53BP1 to DSBs was reduced in the NIPBL-deficient patient cells. Association of NIPBL deficiency and impaired NHEJ was also observed in a plasmid-based end-joining assay and a yeast model system. Our results suggest that NIPBL plays an important and evolutionarily conserved role in NHEJ, in addition to its canonical function in sister chromatid cohesion and its recently suggested function in HR.DNA double strand breaks (DSBs) pose a severe threat to genome integrity, but can also be a necessary part of normal cellular processes, such as meiosis and Ig class switch recombination (CSR). Depending on cell cycle phase and DSB structure, different strategies are used for repair. Homologous recombination (HR) depends on a homologous DNA template for repair, preferentially the identical sister chromatid, and is therefore mainly active during the S and G2 phases. Nonhomologous end joining (NHEJ), however, is active throughout the cell cycle and is the principal pathway during the G1 phase, when there is no immediate close template for homologous repair. The classical NHEJ pathway requires not only the key components of the NHEJ machinery, i.e., Ku70/Ku80, DNA-PKcs, Artemis, XLF (Cernunnos), XRCC4, and DNA ligase IV, but also several DNA damage sensors or adaptors, such as ATM, γH2AX, 53BP1, MDC1, RNF168, and the Mre11–Rad50–NBS1 complex.Cohesin is an evolutionarily conserved multisubunit complex consisting of a heterodimer of two structural maintenance of chromosomes (SMC) proteins, SMC1A and SMC3, one kleisin protein RAD21 (MCD1 or SCC1) and SA (STAG1/2 or SCC3). The SMC proteins fold back on themselves in the hinge region to form long antiparallel coiled-coil arms, with the amino and carboxyl termini coming together to create head domains that contain ATPases. RAD21 bridges the two head domains to facilitate the formation of the proposed ring-like structure of the complex, and it also interacts with the SA subunit. The cohesin complex ensures correct chromosome segregation through cohesion between sister chromatids (Nasmyth and Haering, 2009). In addition to this canonical role, cohesin and its loading complex NIPBL/MAU2 have also been suggested to be important for regulation of gene expression and repair of DSBs through HR, presumably by facilitating proximity between the broken DNA ends and the repair template (Sjögren and Nasmyth, 2001; Vrouwe et al., 2007; Nasmyth and Haering, 2009). Smc1, the yeast SMC1A orthologue, has furthermore been suggested to coordinate the HR and NHEJ processes (Schär et al., 2004).Cornelia de Lange syndrome (CdLS) is a developmental disorder characterized by growth retardation, severe intellectual disability, gastrointestinal abnormalities, malformations, of the upper limbs and characteristic facial dysmorphisms. Heterozygous loss-of-function mutations in NIPBL, encoding the cohesin loader NIPBL, are the major cause of CdLS (Liu and Baynam, 2010). In addition, mutations in the SMC1A, SMC3, PDS5B, RAD21, and HDAC8 encoding genes, all being part of the cohesion pathway, have been found in selected CdLS patients. The multisystem dysfunctions connected to the syndrome implicate defective gene regulation during fetal development and current evidence suggests that CdLS may be caused by alterations in cohesin chromatin-binding dynamics (Liu et al., 2009). In addition, cell lines established from CdLS patients have an increased sensitivity to DNA damage that has been suggested to be caused by defective HR-mediated repair (Vrouwe et al., 2007).Here, we show an increased DNA damage sensitivity, especially after exposure to γ-rays, in B-lymphoblastoid (LCLs) and fibroblast cell lines (FBs) from NIPBL-deficient CdLS patients. However, we also observed that the majority of the patient and control cells studied were in the G1 phase of the cell cycle, where NHEJ is the principle DSB repair mechanism. We therefore investigated whether defective NHEJ could underlie the DNA damage sensitivity observed in the patient cells. |
