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Isolation and characterization of a novel indigenous intestinal N4-related coliphage vB_EcoP_G7C
Authors:Kulikov Eugene  Kropinski Andrew M  Golomidova Alla  Lingohr Erika  Govorun Vadim  Serebryakova Marina  Prokhorov Nikolai  Letarova Maria  Manykin Anatolij  Strotskaya Alexandra  Letarov Andrey
Affiliation:
  • a Winogradsky Institute of Microbiology, Russian Academy of Science, pr. 60-letiya Oktyabrya 7, Building 2. 117 312, Moscow, Russia
  • b Public Health Agency of Canada, Laboratory for Foodborne Diseases, 110 Stone Road West, Guelph, ON N1G 3W4, Canada
  • c Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada
  • d Institute of Physico-Chemical Medicine, Federal Medico-Biological Agency, ul. M. Pirogovskaya 1a, 113435, Moscow, Russia
  • e Ivanovsky Institute of Virology, Russian Academy of Medical Sciences, ul. Gamaleya 16, 123098, Moscow, Russia
  • Abstract:
    Lytic coliphage vB_EcoP_G7C and several other highly related isolates were obtained repeatedly from the samples of horse feces held in the same stable thus representing a component of the normal indigenous intestinal communities in this population of animals. The genome of G7C consists of 71,759 bp with terminal repeats of about 1160 bp, yielding approximately 73 kbp packed DNA size. Seventy-eight potential open reading frames, most of them unique to N4-like viruses, were identified and annotated. The overall layout of functional gene groups was close to that of the original N4 phage, with some important changes in late gene area including new tail fiber proteins containing hydrolytic domains. Structural proteome analysis confirmed all the predicted subunits of the viral particle. Unlike N4 itself, phage G7C did not exhibit a lysis-inhibited phenotype.
    Keywords:Escherichia coli   Podoviridae   N4   Lytic phage   Complete genome sequence   Sequence analysis   Proteomics   Tail fiber   N4-like coliphage   Enterobacteria bacteriophage
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