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Practical quantification of necrosis in histological whole-slide images
Authors:André Homeyer  Andrea Schenk  Janine Arlt  Uta Dahmen  Olaf Dirsch  Horst K. Hahn
Affiliation:1. Fraunhofer MEVIS, Universitätsallee 29, 28359 Bremen, Germany;2. Department of General, Visceral and Vascular Surgery, Friedrich-Schiller-University Jena, Drackendorfer Str. 1, 07747 Jena, Germany;3. Institute of Pathology, University Hospital Jena, 07747 Jena, Germany
Abstract:
Since the histological quantification of necrosis is a common task in medical research and practice, we evaluate different image analysis methods for quantifying necrosis in whole-slide images. In a practical usage scenario, we assess the impact of different classification algorithms and feature sets on both accuracy and computation time. We show how a well-chosen combination of multiresolution features and an efficient postprocessing step enables the accurate quantification necrosis in gigapixel images in less than a minute. The results are general enough to be applied to other areas of histological image analysis as well.
Keywords:Necrosis quantification  Histological image analysis  Whole-slide imaging  Pattern recognition
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