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Synthesis of diagnostic quality cancer pathology images by generative adversarial networks
Authors:Adrian B Levine  Jason Peng  David Farnell  Mitchell Nursey  Yiping Wang  Julia R Naso  Hezhen Ren  Hossein Farahani  Colin Chen  Derek Chiu  Aline Talhouk  Brandon Sheffield  Maziar Riazy  Philip P Ip  Carlos Parra-Herran  Anne Mills  Naveena Singh  Basile Tessier-Cloutier  Taylor Salisbury  Jonathan Lee  Tim Salcudean  Steven JM Jones  David G Huntsman  C Blake Gilks  Stephen Yip  Ali Bashashati
Affiliation:1. Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada;2. Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

School of Biomedical Engineering, University of British Columbia, Vancouver, Canada

These authors contributed equally to this work.;3. Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

School of Biomedical Engineering, University of British Columbia, Vancouver, Canada;4. Department of Obstetrics and Gynecology, University of British Columbia, Vancouver, Canada;5. Department of Pathology, William Osler Health Centre-Brampton Civic Hospital, Brampton, Canada;6. Department of Pathology, University of Hong Kong, Hong Kong SAR, PR China;7. Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Canada;8. Department of Pathology, University of Virginia, Charlottesville, VA, USA;9. Barts and the London School of Medicine and Dentistry, Queen Mary University of London, London, UK;10. Electrical & Computer Engineering, University of British Columbia, Vancouver, Canada;11. Canada's Michael Smith Genome Sciences Centre, Vancouver, Canada

Abstract:
Deep learning-based computer vision methods have recently made remarkable breakthroughs in the analysis and classification of cancer pathology images. However, there has been relatively little investigation of the utility of deep neural networks to synthesize medical images. In this study, we evaluated the efficacy of generative adversarial networks to synthesize high-resolution pathology images of 10 histological types of cancer, including five cancer types from The Cancer Genome Atlas and the five major histological subtypes of ovarian carcinoma. The quality of these images was assessed using a comprehensive survey of board-certified pathologists (n = 9) and pathology trainees (n = 6). Our results show that the real and synthetic images are classified by histotype with comparable accuracies and the synthetic images are visually indistinguishable from real images. Furthermore, we trained deep convolutional neural networks to diagnose the different cancer types and determined that the synthetic images perform as well as additional real images when used to supplement a small training set. These findings have important applications in proficiency testing of medical practitioners and quality assurance in clinical laboratories. Furthermore, training of computer-aided diagnostic systems can benefit from synthetic images where labeled datasets are limited (e.g. rare cancers). We have created a publicly available website where clinicians and researchers can attempt questions from the image survey ( http://gan.aimlab.ca/ ). © 2020 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.
Keywords:cancer  pathology  deep learning  artificial intelligence  quality assurance  education
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