A bioinformatics pipeline for high-throughput microbial multilocus sequence typing (MLST) analyses

Multilocus sequence typing (MLST) analysis for semi-routine applications is hindered by the downstream, manually intensive steps of processing the raw sequence data files. This report describes the development of an MLST pipeline that automates DNA sequence editing and analysis in order to significantly reduce the time required for processing data. Validation using a pneumococcal dataset revealed complete agreement between the results generated by manual and automated workflows. The MLST pipeline was developed for both double-strand and single-strand sequencing.     

我院基于XML异构数据集成的开发应用及研究

基于XML的数据集成，Web Services中间件能够较容易地实现对各数据源的描述以及数据源之间的数据转换，它在应用程序和数据库之间起着接口的作用．本文结合实际医院信息工作，运用VFP9 COM模型，作了有效性的研究及应用，并对标准数据集的二次开发进行了讨论。结果表明，该方法用于医院跨网络平台、跨应用系统、异构信息集成是有效的和易于操作的。     

SAGE遗传分析系统的功能及应用

SAGE是集多功能于一体的医学遗传学群体与家系资料计算机分析系统。本文概述SAGE系统的主要功能及应用环境。重点介绍了FCOR2和TDTEX两个功能模块的数学原理和使用方法。应用TDTEX模块 ,我们发现微卫星标记 85ca与小儿失神症存在连锁不平衡 ,提示在该位点附近存在小儿失神症的易感基因     

影像导航计算机辅助手术系统中的空间数据结构模型研究

影像导航计算机辅助手术系统（ICAS）是一种为术者提供术野周围重要解剖结构信息的辅助工具，可提高手术安全性和成功率。合理的空间数据结构模型是确保ICAS实现导航功能的关键因素之一。本研究提出了组合邻接表线索化八叉树模型（MALTO），并就基本操作的可实现性和实时性，分析比较了MALTO与4种常用模型的性能。研究结果表明：MALTO不但可以实现数据查找、搜索和计算等基本操作，且具有时间效率优势。因此，MALTO是适合于ICAS的空间数据结构模型。     

Immunology of DNA. II. The effect of size and structure of the antigen on the Farr assay.

The Farr assay for the detecton of antibodies to double stranded (ds) DNA is influenced by the DNA preparations used as antigen. To elucidate this the molecular weight of the antigen preparation, contamination with proteins and presence or absence of single stranded (ss) regions were studied with the following conclusions: 1) The degree of DNA binding by antibodies is linearly dependent on the molecular weight of the DNA, provided that this does not exceed 10 X 10(6). 2) Deproteinization of E. coli DNA by chromatography on methylated albumin-kieselguhr(MAK) columns results in lower binding by most sera. 3) ds DNA preparations sometimes contain ss regions which bind antibodies to ss DNA. The difference in behaviour of different ds DNA preparations may be ascribed entirely to these factors and not to differences in antigenic determinants. We have standardized the Farr assay and enhanced its specificity by the use of circular DNA isolated from bacteriophage PM2.     

Opioid activities of human β-casomorphins

Summary Opioid activities of human -casomorphin-4,-5,-7 and -8 and, for comparison, of the corresponding bovine -casomorphins were studied in the guinea-pig ileum preparation. Binding parameters, i.e. K _d -values and binding site concentrations, for the interaction of human and bovine -casomorphins with opioid receptors in rat brain homogenates were determined in inhibition experiments, using [³H]-(d-Ala², MePhe⁴, Gly-ol⁵)enkephalin, [³H]-(d-Ala², d-Leu⁵)enkephalin and [³H]ethylketazocin as -, - and -opioid receptor ligands. Analysis of binding data was performed using a non-linear curve fitting program. All -casomorphins examined displayed opioid activity. The affinity was highest for -receptors, less so for -receptors and lowest for -receptors. It is suggested that human -casomorphins might play a role as food hormones.     

Longitudinal studies of drug abuse in a fifteen-year-old population. 5. Prognostic factors

In an attempt to identify prognostic factors, non-drug users and abusers in the Gothenburg year cohort of 1953 were compared with reference to background data. Individuals with chronic abuse differed most from the "normal" group. Prognostic factors for drug abuse were: member of a multiproblem family, child psychiatric care, contact with the Social Welfare Administration at an early age, truancy, placement in special class, premature drop-out from school, admitted high-frequency drug use in a school questionnaire, for boys early registration for crimes and for girls nervous complaints. The results indicate the necessity of earlier and more effective prevention.     

科技期刊关联数据开放共享及出版政策研究

【目的】 搭建一个适合我国科技期刊关联数据出版的框架,为科技期刊制订关联数据开放共享及出版政策提供参考。【方法】 通过文献分析和网络调研方法,对国内外出版机构及科技期刊在关联数据出版方面的政策进行跟踪调研,并基于数据FAIR原则,分别从数据的可发现、可获取、可互操作和可重用4个维度进行具体分析,明确科技期刊关联数据出版的要素。【结果】 结合我国科技期刊发展现状及规划,通过共享分级并将数据出版要素纳入其中,提出符合国际数据共享政策、面向我国科技期刊的关联数据出版通用数据政策框架。【结论】 所提出的期刊关联数据共享分级策略,可为不同期刊数据政策的制订提供参考。     

学术期刊关联数据出版与共享中的信息安全管理

【目的】 对我国学术期刊关联数据出版与共享中的信息安全管理的概念、政策及其存在的问题进行梳理,有助于科学数据出版与共享工作的推进。【方法】 基于我国科学数据出版与共享的演化过程,以及地理资源期刊在科学数据共享方面的现状与发展情况,对期刊论文关联数据出版和安全管理情况进行分析,对平台间合作的模式进行探讨。【结果】 为实现科学数据的价值最大化,中国自上而下建立起了科学数据共享系统,包括网络基础设施、数据库、数据中心、数据服务平台等,制定了一系列数据获取和管理规范,并制定了保障科学数据信息安全的相关法律。【结论】 科学数据出版与共享应建立在安全的基础上。经过初期的大规模建设后,数据出版与共享及其安全管理应走向“提质增效”阶段,要注重高新技术的注入和专业人才的培养。在管理措施上要以保证数据安全为基础,以数据质量为核心,从而提升信息安全管理水平,提高数据再应用效率。