The crystal structures of two solvated forms of ternatin, cyclo[-β-OH-d -Leu-d -Ile-(NMe)Ala-(NMe)Leu-Leu-(NMe)Ala-d -(NMe)Ala-] are reported. The first crystallizes with two molecules of peptide and one of dioxane in the asymmetric unit: P212121, a = 11.563(1), b = 21.863(2), c = 36.330(4) Å. The second crystallizes with two molecules of peptide and one of water in the asymmetric unit: P212121, a = 14.067(2), b = 16.695(1), c = 36.824(6) Å. N-Methylation of four of the seven residues of ternatin appears to reduce the number of low-energy conformations the molecule can assume. The same H-bonded macrocyclic ring conformation is adopted by the backbone of each of the four molecules observed here. All the amino-acid side chains, with the exception of d -Ile2, have similar orientations in each of the four conformers. The heptapeptide macrocycle is characterized by: (i) a cis peptide between (NMe)Ala3 and (NMe)Leu4, (ii) a type II β-bend, involving residues Leu5-(NMe)Ala6-d -(NMe)Ala7-β-OH-d -Leu2, stabilized by two H-bonds, N1′05 and N5′01, between Leu5 and β-OH-d -Leu1 residues, (iii) a third intramolecular H-bond, observed in each of the four molecules, between the hydroxyl group of β-OH-d -Leu1 and the carbonyl oxygen of d -Ile2. 相似文献
Conformational aspects of 4 → 1 hydrogen bonded cyclic pentapeptides are considered in this paper from the point of view of “contact criteria” and potential energy calculations. Three types of such hydrogen bonded conformations, designated A1, A2 and B, are possible, involving some amount of strain on the bond angles. The energy of hydrogen bonded cyclopentaglycyl is somewhat less than that of the five-fold symmetrical conformation. The stereochemical feasibility of introducing l - and d -alanyl residues in these structures has also been studied and the possible types for different sequences of alanyl residues have been determined. The results are discussed further in the light of the limited data available from crystal structure and nuclear magnetic resonance studies on cyclic pentapeptides. 相似文献
Summary: Benzylamine, hexylamine and aniline‐initiated polymerizations of D ,L ‐phenylalanine and L ‐phenylalanine N‐carboxyanhydride (D ,L ‐Phe‐NCA and L ‐Phe‐NCA) were performed in various solvents. The isolated polypeptides were characterized by MALDI‐TOF mass spectroscopy. Exclusively linear polypeptides having one amide and one amino endgroup were found, when the polymerizations were conducted in a closed reaction vessel with dioxane or sulfolane as reaction media. Traces of water competed with aniline as initiator, when the reaction vessel was closed with a drying tube. In N,N‐dimethylformamide (DMF) formyl endgroups were formed at polymerization temperatures of 60 °C. In DMF and N‐methylpyrrolidone, cyclic oligo‐ and polypeptides were formed by a solvent‐induced polymerization initiated by zwitterions, which may compete with the primary amine‐initiated polymerizations.
MALDI‐TOF mass spectrum of a poly(D ,L ‐phenylalanine) polymerized in NMP without addition of an initiator. 相似文献
Abstract: Amino acid sequences and linear or head‐to‐tail cyclopeptides can be represented conveniently in one‐line text formulae using the three‐letter symbols. However, other – but nonetheless important – topologies of peptides are ‘side chain‐to‐head (or tail)’, ‘backbone‐to‐backbone’, ‘side chain‐to‐side chain’ cyclopeptides, ‘side chain‐to‐side chain’ connected peptide strands, and branched peptides (like peptide dendrimers). In general, such structures cannot be described using the three‐letter symbols in one‐line text: a chemical structure editor is required for symbolic representations according to the IUPAC‐IUBMB recommendations. The aim of this contribution is to offer an unambiguous and general nomenclature system that enables researchers to represent all cyclic and branched homo‐ and hetero‐detic peptides in a coherent manner in one‐line text – as long as their as constituents can be represented in (three)‐letter codes. The application of this new nomenclature would overcome the existing difficulties and provide a way to express complex situations in the shortest way in order to highlight more clearly the salient points in a given scientific communication. 相似文献