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Immersed Boundary Approach to Biofilm Spread on Surfaces
Authors:Ana Carpio & Rafael Gonzá  lez-Albaladejo
Abstract:We propose a computational model to study the growth and spread of bacterial biofilms on interfaces, as well as the action of antibiotics on them. Bacterial membranes are represented by boundaries immersed in a fluid matrix and subject to interaction forces. Growth, division and death of bacterial cells follow dynamic energy budget rules, in response to variations in environmental concentrations of nutrients, toxicants and substances released by the cells. In this way, we create, destroy and enlarge boundaries, either spherical or rod-like. Appropriate forces represent details of the interaction between cells, and the interaction with the environment. We can investigate geometrical arrangements and the formation of porous structures. Numerical simulations illustrate the evolution of top views and diametral slices of small biofilm seeds, as well as the action of antibiotics. We show that cocktails of antibiotics targeting active and dormant cells can entirely eradicate a biofilm.
Keywords:Hybrid multiscale models  immersed boundary methods  dynamic energy budget models  bacterial biofilm  antibiotic resistance  
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